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Port details
igv Visualization tool for genomic datasets
2.4.10 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 25 Jun 2018 23:56:15
Also Listed In: java
License: MIT
The Integrative Genomics Viewer (IGV) is a high-performance visualization tool
for interactive exploration of large, integrated genomic datasets. It supports
a wide variety of data types, including array-based and next-generation sequence
data, and genomic annotations.

WWW: https://software.broadinstitute.org/software/igv/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (8 items)
  1. bin/igv
  2. /usr/local/share/java/classes/batik-codec__V1.7.jar
  3. /usr/local/share/java/classes/goby-io-igv__V1.0.jar
  4. /usr/local/share/java/classes/igv.jar
  5. share/pixmaps/igv.png
  6. /usr/local/share/licenses/igv-2.4.10/catalog.mk
  7. /usr/local/share/licenses/igv-2.4.10/LICENSE
  8. /usr/local/share/licenses/igv-2.4.10/MIT
  9. Collapse this list.

To install the port: cd /usr/ports/biology/igv/ && make install clean
To add the package: pkg install igv

PKGNAME: igv

distinfo:

TIMESTAMP = 1529969906
SHA256 (igv-2.4.10/tools.png) = 7a619d7770da008d1bc23a60a07f416625ba3a404a3656b8d1bda0de97415d1c
SIZE (igv-2.4.10/tools.png) = 5139
SHA256 (igv-2.4.10/igvteam-igv-v2.4.10_GH0.tar.gz) = 2547050f768384ea14f88962476c6935115e6b2e35322874e4a93c6da7194e73
SIZE (igv-2.4.10/igvteam-igv-v2.4.10_GH0.tar.gz) = 152822902


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. openjfx8-devel>0 : java/openjfx8-devel
  2. java : java/openjdk8
  3. ant : devel/apache-ant
Runtime dependencies:
  1. openjfx8-devel>0 : java/openjfx8-devel
  2. java : java/openjdk8
Library dependencies:
  1. libintl.so : devel/gettext-runtime
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
gettext-runtime

Master Sites:
  1. https://codeload.github.com/igvteam/igv/tar.gz/v2.4.10?dummy=/

Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
25 Jun 2018 23:56:01
Original commit files touched by this commit  2.4.10
Revision:473356
yuri search for other commits by this committer
New port: biology/igv: Visualization tool for genomic datasets

Number of commits found: 1

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